PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca60449.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 257aa    MW: 28133.6 Da    PI: 7.8855
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca60449.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.73.2e-322103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++l+q+++e+
  Dca60449.1   2 SCNGCRVLRKGCSETCMLRPCIqwidtPESQGHATVFVAKFFGRAGLMSFISNVPPNQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWHLCQAAVET 100
                 6***********************************************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  Dca60449.1 101 VLR 103
                 876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.0431107IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-272101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCMLR PCIQWIDTPE SQGHATVFVA KFFGRAGLMS FISNVPPNQR  60
PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WHLCQAAVET VLRGGTLRPI PEFLVGAPAS  120
PTTPDNSDDI STVNIFHDLN SAAAKTTVSP PRFSNSKRRR PAADLENNHN HHQHQHRQQQ  180
QLDLSLTPPS FLHTPASQRW IPAVEKQRPG TPSFDSEESA ATVSFESGLG HGHGHGIGNG  240
YHYQATEVNH KLLDLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679613.17e-93PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN112e-79LBD37_ARATH; LOB domain-containing protein 37
SwissprotQ9SZE81e-79LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0K9Q7W41e-101A0A0K9Q7W4_SPIOL; Uncharacterized protein
STRINGBra036040.1-P4e-82(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-78LOB domain-containing protein 38